PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 348aa    MW: 37664.3 Da    PI: 6.9733
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.3e-35221262101
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasns 85 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++               ++ae+++ +a++ 
  Vradi0023s00780.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwhptanA------ADAENNHTNAGS- 106
                        79**************************************************************665432221......211111111111. PP

                TCP  86 ssg.....kaaksaa.kskksq 101
                          +     ++++s+  + + ++
  Vradi0023s00780.1 107 --SdmgiaEQSESSGyNFQLQR 126
                        ..12233322222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3222125IPR005333Transcription factor, TCP
PROSITE profilePS5136932.9862482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLAELPPWHP TANAADAENN HTNAGSSDMG IAEQSESSGY  120
NFQLQRQLGE DHDNHHSVFI PAPIDTDAIA FFPTTTATSS INFPTYPPDI ISRTNNSTED  180
LGLSLHSFQD PGLIHGQSQA DANQTQTPSN HQTLFSGSTQ VGFEANYPRI LTWNNDAGTD  240
MNRTGFMVNS PALLGQGGSA AYSQRGTLQS SFSPSLRPWS DIPMASSSEH HKSQPIQQAS  300
IFGSRFLSDA LPGFCIPARI QGEDGSHGVG PDKTSSSSPN SHHRTQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522077.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_014522078.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_014522079.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR57e-71TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0L9ULH90.0A0A0L9ULH9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SHM30.0A0A0S3SHM3_PHAAN; Uncharacterized protein
STRINGGLYMA13G36840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-72TCP family protein